IL_6GZQ_022

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GA*UCC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZQ_022 not in the Motif Atlas

Geometric match to IL_4V9F_034

Geometric discrepancy: 0.2585

The information below is about IL_4V9F_034

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

61

Unit IDs

6GZQ|1|A1|G|911
6GZQ|1|A1|A|912
*
6GZQ|1|A1|U|961
6GZQ|1|A1|C|962
6GZQ|1|A1|C|963

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain B1

5S ribosomal RNA; 5S rRNA

Chain L1

50S ribosomal protein L16

Chain U1

50S ribosomal protein L25