IL_6GZQ_025

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GAGC*GUCC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZQ_025 not in the Motif Atlas

Geometric match to IL_1MFQ_004

Geometric discrepancy: 0.2155

The information below is about IL_1MFQ_004

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_73915.1

Basepair signature

cWW-L-R-cWW-cWW

Number of instances in this motif group

21

Unit IDs

6GZQ|1|A1|G|999
6GZQ|1|A1|A|1000
6GZQ|1|A1|G|1001
6GZQ|1|A1|C|1002
*
6GZQ|1|A1|G|1009
6GZQ|1|A1|U|1010
6GZQ|1|A1|C|1011
6GZQ|1|A1|C|1012

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain B1

5S ribosomal RNA; 5S rRNA

Chain L1

50S ribosomal protein L16