IL_6GZQ_028

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CCCCCAAG*CG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZQ_028 not in the Motif Atlas

Homologous match to IL_4WF9_037

Geometric discrepancy: 0.2036

The information below is about IL_4WF9_037

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

6GZQ|1|A1|C|1052
6GZQ|1|A1|C|1053
6GZQ|1|A1|C|1054
6GZQ|1|A1|C|1055
6GZQ|1|A1|C|1056
6GZQ|1|A1|A|1057
6GZQ|1|A1|A|1058
6GZQ|1|A1|G|1059
*
6GZQ|1|A1|C|1198
6GZQ|1|A1|G|1199

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain I1

50S ribosomal protein L13

Chain P1

50S ribosomal protein L20