IL_6GZQ_032

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GAUG*CGC

Length

7 nucleotides

Bulged bases

6GZQ|1|A1|U|1081

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZQ_032 not in the Motif Atlas

Homologous match to IL_4WF9_041

Geometric discrepancy: 0.163

The information below is about IL_4WF9_041

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

6GZQ|1|A1|G|1079
6GZQ|1|A1|A|1080
6GZQ|1|A1|U|1081
6GZQ|1|A1|G|1082
*
6GZQ|1|A1|C|1169
6GZQ|1|A1|G|1170
6GZQ|1|A1|C|1171

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain G1

50S ribosomal protein L6

Chain L1

50S ribosomal protein L16

Chain e1

50S ribosomal protein L36