IL_6GZQ_041

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CUAAG*CGAAG

Length

10 nucleotides

Bulged bases

6GZQ|1|A1|A|1427

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZQ_041 not in the Motif Atlas

Homologous match to IL_7RQB_052

Geometric discrepancy: 0.1757

The information below is about IL_7RQB_052

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_89002.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

20

Unit IDs

6GZQ|1|A1|C|1399
6GZQ|1|A1|U|1400
6GZQ|1|A1|A|1401
6GZQ|1|A1|A|1402
6GZQ|1|A1|G|1403
*
6GZQ|1|A1|C|1424
6GZQ|1|A1|G|1425
6GZQ|1|A1|A|1426
6GZQ|1|A1|A|1427
6GZQ|1|A1|G|1428

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain C1

50S ribosomal protein L2

Chain c1

50S ribosomal protein L34