IL_6GZQ_042

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

UGAAG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZQ_042 not in the Motif Atlas

Homologous match to IL_7RQB_053

Geometric discrepancy: 0.2213

The information below is about IL_7RQB_053

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

24

Unit IDs

6GZQ|1|A1|U|1405
6GZQ|1|A1|G|1406
6GZQ|1|A1|A|1407
6GZQ|1|A1|A|1408
6GZQ|1|A1|G|1409
*
6GZQ|1|A1|C|1418
6GZQ|1|A1|G|1419
6GZQ|1|A1|U|1420
6GZQ|1|A1|A|1421
6GZQ|1|A1|G|1422

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain C1

50S ribosomal protein L2

Chain W1

50S ribosomal protein L28

Chain c1

50S ribosomal protein L34