IL_6GZQ_045

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GCUAG*CGAAGC

Length

11 nucleotides

Bulged bases

6GZQ|1|A1|A|1603

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZQ_045 not in the Motif Atlas

Geometric match to IL_2QWY_007

Geometric discrepancy: 0.3505

The information below is about IL_2QWY_007

Detailed Annotation

tSH-tWH-tHS

Broad Annotation

No text annotation

Motif group

IL_38862.5

Basepair signature

cWW-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

6GZQ|1|A1|G|1484
6GZQ|1|A1|C|1485
6GZQ|1|A1|U|1486
6GZQ|1|A1|A|1487
6GZQ|1|A1|G|1488
*
6GZQ|1|A1|C|1600
6GZQ|1|A1|G|1601
6GZQ|1|A1|A|1602
6GZQ|1|A1|A|1603
6GZQ|1|A1|G|1604
6GZQ|1|A1|C|1605

Current chains

Chain A1

23S ribosomal RNA

Nearby chains