IL_6GZQ_049

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

UG*CAACAAG

Length

9 nucleotides

Bulged bases

6GZQ|1|A1|A|1558

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZQ_049 not in the Motif Atlas

Homologous match to IL_7RQB_061

Geometric discrepancy: 0.3244

The information below is about IL_7RQB_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_52493.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

6GZQ|1|A1|U|1530
6GZQ|1|A1|G|1531
*
6GZQ|1|A1|C|1554
6GZQ|1|A1|A|1555
6GZQ|1|A1|A|1556
6GZQ|1|A1|C|1557
6GZQ|1|A1|A|1558
6GZQ|1|A1|A|1559
6GZQ|1|A1|G|1560

Current chains

Chain A1

23S ribosomal RNA

Nearby chains