IL_6GZQ_053

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GGAACUCUG*CUGUC

Length

14 nucleotides

Bulged bases

6GZQ|1|A1|G|2016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZQ_053 not in the Motif Atlas

Geometric match to IL_7A0S_109

Geometric discrepancy: 0.1559

The information below is about IL_7A0S_109

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80252.1

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

10

Unit IDs

6GZQ|1|A1|G|1715
6GZQ|1|A1|G|1716
6GZQ|1|A1|A|1717
6GZQ|1|A1|A|1718
6GZQ|1|A1|C|1719
6GZQ|1|A1|U|1720
6GZQ|1|A1|C|1721
6GZQ|1|A1|U|1722
6GZQ|1|A1|G|1723
*
6GZQ|1|A1|C|2014
6GZQ|1|A1|U|2015
6GZQ|1|A1|G|2016
6GZQ|1|A1|U|2017
6GZQ|1|A1|C|2018

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain D1

50S ribosomal protein L3

Chain J1

50S ribosomal protein L14