IL_6GZQ_060

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

UCAAG*CGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZQ_060 not in the Motif Atlas

Homologous match to IL_7RQB_074

Geometric discrepancy: 0.1968

The information below is about IL_7RQB_074

Detailed Annotation

UAA/GAN with extra stack

Broad Annotation

No text annotation

Motif group

IL_90318.1

Basepair signature

cWW-tSH-L-R-L-R-cWW

Number of instances in this motif group

3

Unit IDs

6GZQ|1|A1|U|1884
6GZQ|1|A1|C|1885
6GZQ|1|A1|A|1886
6GZQ|1|A1|A|1887
6GZQ|1|A1|G|1888
*
6GZQ|1|A1|C|1911
6GZQ|1|A1|G|1912
6GZQ|1|A1|A|1913
6GZQ|1|A1|A|1914
6GZQ|1|A1|G|1915

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain C1

50S ribosomal protein L2