IL_6GZQ_061

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GGGAG*CGAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZQ_061 not in the Motif Atlas

Homologous match to IL_7RQB_075

Geometric discrepancy: 0.1796

The information below is about IL_7RQB_075

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

6GZQ|1|A1|G|1889
6GZQ|1|A1|G|1890
6GZQ|1|A1|G|1891
6GZQ|1|A1|A|1892
6GZQ|1|A1|G|1893
*
6GZQ|1|A1|C|1906
6GZQ|1|A1|G|1907
6GZQ|1|A1|A|1908
6GZQ|1|A1|A|1909
6GZQ|1|A1|C|1910

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain W1

50S ribosomal protein L28