IL_6GZQ_082

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

UUGAG*CAAGAUGAG

Length

14 nucleotides

Bulged bases

6GZQ|1|A1|G|2795

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZQ_082 not in the Motif Atlas

Homologous match to IL_4WF9_099

Geometric discrepancy: 0.1306

The information below is about IL_4WF9_099

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

6GZQ|1|A1|U|2650
6GZQ|1|A1|U|2651
6GZQ|1|A1|G|2652
6GZQ|1|A1|A|2653
6GZQ|1|A1|G|2654
*
6GZQ|1|A1|C|2789
6GZQ|1|A1|A|2790
6GZQ|1|A1|A|2791
6GZQ|1|A1|G|2792
6GZQ|1|A1|A|2793
6GZQ|1|A1|U|2794
6GZQ|1|A1|G|2795
6GZQ|1|A1|A|2796
6GZQ|1|A1|G|2797

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain D1

50S ribosomal protein L3

Chain I1

50S ribosomal protein L13