IL_6GZQ_083

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZQ_083 not in the Motif Atlas

Geometric match to IL_7RQB_103

Geometric discrepancy: 0.2205

The information below is about IL_7RQB_103

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.1

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

6GZQ|1|A1|C|2666
6GZQ|1|A1|U|2667
6GZQ|1|A1|A|2668
6GZQ|1|A1|G|2669
6GZQ|1|A1|U|2670
6GZQ|1|A1|A|2671
6GZQ|1|A1|C|2672
*
6GZQ|1|A1|G|2677
6GZQ|1|A1|G|2678
6GZQ|1|A1|A|2679
6GZQ|1|A1|C|2680
6GZQ|1|A1|C|2681
6GZQ|1|A1|G|2682

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain G1

50S ribosomal protein L6