IL_6GZQ_088

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GG*UCC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZQ_088 not in the Motif Atlas

Homologous match to IL_7RQB_108

Geometric discrepancy: 0.2312

The information below is about IL_7RQB_108

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.12

Basepair signature

cWW-L-cWW

Number of instances in this motif group

40

Unit IDs

6GZQ|1|A1|G|2850
6GZQ|1|A1|G|2851
*
6GZQ|1|A1|U|2890
6GZQ|1|A1|C|2891
6GZQ|1|A1|C|2892

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain M1

50S ribosomal protein L17