IL_6GZQ_096

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

UGAC*GG

Length

6 nucleotides

Bulged bases

6GZQ|1|A2|G|123, 6GZQ|1|A2|A|124

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZQ_096 not in the Motif Atlas

Homologous match to IL_6CZR_119

Geometric discrepancy: 0.1516

The information below is about IL_6CZR_119

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_33761.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

6GZQ|1|A2|U|122
6GZQ|1|A2|G|123
6GZQ|1|A2|A|124
6GZQ|1|A2|C|125
*
6GZQ|1|A2|G|226
6GZQ|1|A2|G|227

Current chains

Chain A2

16S ribosomal RNA

Nearby chains

Chain P2

30S ribosomal protein S16

Chain Q2

30S ribosomal protein S17

Chain T2

30S ribosomal protein S20