IL_6GZQ_098

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GACAAC*GCUAAUC

Length

13 nucleotides

Bulged bases

6GZQ|1|A2|U|167

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZQ_098 not in the Motif Atlas

Homologous match to IL_4LFB_009

Geometric discrepancy: 0.1629

The information below is about IL_4LFB_009

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_12745.1

Basepair signature

cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

1

Unit IDs

6GZQ|1|A2|G|142
6GZQ|1|A2|A|143
6GZQ|1|A2|C|144
6GZQ|1|A2|A|145
6GZQ|1|A2|A|146
6GZQ|1|A2|C|147
*
6GZQ|1|A2|G|162
6GZQ|1|A2|C|163
6GZQ|1|A2|U|164
6GZQ|1|A2|A|165
6GZQ|1|A2|A|166
6GZQ|1|A2|U|167
6GZQ|1|A2|C|168

Current chains

Chain A2

16S ribosomal RNA

Nearby chains

Chain T2

30S ribosomal protein S20