IL_6GZQ_105

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

UGG*CUGA

Length

7 nucleotides

Bulged bases

6GZQ|1|A2|G|383

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZQ_105 not in the Motif Atlas

Geometric match to IL_4V9F_097

Geometric discrepancy: 0.3283

The information below is about IL_4V9F_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_21175.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

8

Unit IDs

6GZQ|1|A2|U|370
6GZQ|1|A2|G|371
6GZQ|1|A2|G|372
*
6GZQ|1|A2|C|381
6GZQ|1|A2|U|382
6GZQ|1|A2|G|383
6GZQ|1|A2|A|384

Current chains

Chain A2

16S ribosomal RNA

Nearby chains

Chain P2

30S ribosomal protein S16