IL_6GZQ_110
3D structure
- PDB id
- 6GZQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T. thermophilus hibernating 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.28 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 6GZQ|1|A2|A|515, 6GZQ|1|A2|U|517, 6GZQ|1|A2|A|518
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GZQ_110 not in the Motif Atlas
- Homologous match to IL_4LFB_021
- Geometric discrepancy: 0.3958
- The information below is about IL_4LFB_021
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_52042.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
6GZQ|1|A2|G|498
6GZQ|1|A2|U|499
6GZQ|1|A2|G|500
6GZQ|1|A2|C|501
6GZQ|1|A2|C|502
6GZQ|1|A2|A|503
6GZQ|1|A2|G|504
*
6GZQ|1|A2|C|511
6GZQ|1|A2|G|512
6GZQ|1|A2|G|513
6GZQ|1|A2|U|514
6GZQ|1|A2|A|515
6GZQ|1|A2|A|516
6GZQ|1|A2|U|517
6GZQ|1|A2|A|518
6GZQ|1|A2|C|519
Current chains
- Chain A2
- 16S ribosomal RNA
Nearby chains
- Chain C2
- 30S ribosomal protein S3
- Chain D2
- 30S ribosomal protein S4
- Chain L2
- 30S ribosomal protein S12
- Chain V2
- Ribosome hibernation promoting factor
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