IL_6GZQ_111

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

6GZQ|1|A2|A|555

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZQ_111 not in the Motif Atlas

Homologous match to IL_4LFB_022

Geometric discrepancy: 0.1803

The information below is about IL_4LFB_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20847.1

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

6GZQ|1|A2|C|552
6GZQ|1|A2|G|553
6GZQ|1|A2|U|554
6GZQ|1|A2|A|555
6GZQ|1|A2|A|556
6GZQ|1|A2|A|557
6GZQ|1|A2|G|558
*
6GZQ|1|A2|C|857
6GZQ|1|A2|G|858

Current chains

Chain A2

16S ribosomal RNA

Nearby chains

Chain L2

30S ribosomal protein S12

Chain Q2

30S ribosomal protein S17