IL_6GZQ_116

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GA*UGAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZQ_116 not in the Motif Atlas

Homologous match to IL_4LFB_027

Geometric discrepancy: 0.1747

The information below is about IL_4LFB_027

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

Major groove platform

Motif group

IL_50694.7

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

27

Unit IDs

6GZQ|1|A2|G|637
6GZQ|1|A2|A|638
*
6GZQ|1|A2|U|734
6GZQ|1|A2|G|735
6GZQ|1|A2|A|736
6GZQ|1|A2|C|737

Current chains

Chain A2

16S ribosomal RNA

Nearby chains

Chain H2

30S ribosomal protein S8

Chain O2

30S ribosomal protein S15