IL_6GZQ_120

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GGAGUACG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZQ_120 not in the Motif Atlas

Homologous match to IL_4LFB_034

Geometric discrepancy: 0.1341

The information below is about IL_4LFB_034

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

6GZQ|1|A2|G|864
6GZQ|1|A2|G|865
6GZQ|1|A2|A|866
6GZQ|1|A2|G|867
6GZQ|1|A2|U|868
6GZQ|1|A2|A|869
6GZQ|1|A2|C|870
6GZQ|1|A2|G|871
*
6GZQ|1|A2|U|882
6GZQ|1|A2|G|883
6GZQ|1|A2|A|884
6GZQ|1|A2|A|885
6GZQ|1|A2|A|886
6GZQ|1|A2|C|887

Current chains

Chain A2

16S ribosomal RNA

Nearby chains

Chain L2

30S ribosomal protein S12