IL_6GZQ_122

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GCA*UUCCC

Length

8 nucleotides

Bulged bases

6GZQ|1|A2|C|911

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZQ_122 not in the Motif Atlas

Homologous match to IL_5J7L_041

Geometric discrepancy: 0.2147

The information below is about IL_5J7L_041

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_47078.3

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

6GZQ|1|A2|G|910
6GZQ|1|A2|C|911
6GZQ|1|A2|A|912
*
6GZQ|1|A2|U|1362
6GZQ|1|A2|U|1363
6GZQ|1|A2|C|1364
6GZQ|1|A2|C|1365
6GZQ|1|A2|C|1366

Current chains

Chain A2

16S ribosomal RNA

Nearby chains

Chain G2

30S ribosomal protein S7

Chain V2

Ribosome hibernation promoting factor