IL_6GZQ_125
3D structure
- PDB id
- 6GZQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T. thermophilus hibernating 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.28 Å
Loop
- Sequence
- GG*UCAGC
- Length
- 7 nucleotides
- Bulged bases
- 6GZQ|1|A2|C|1181, 6GZQ|1|A2|A|1182
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GZQ_125 not in the Motif Atlas
- Geometric match to IL_4LFB_045
- Geometric discrepancy: 0.1328
- The information below is about IL_4LFB_045
- Detailed Annotation
- Minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_95583.2
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 11
Unit IDs
6GZQ|1|A2|G|1039
6GZQ|1|A2|G|1040
*
6GZQ|1|A2|U|1180
6GZQ|1|A2|C|1181
6GZQ|1|A2|A|1182
6GZQ|1|A2|G|1183
6GZQ|1|A2|C|1184
Current chains
- Chain A2
- 16S ribosomal RNA
Nearby chains
- Chain C2
- 30S ribosomal protein S3
- Chain J2
- 30S ribosomal protein S10
- Chain N2
- 30S ribosomal protein S14 type Z
- Chain V2
- Ribosome hibernation promoting factor
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