IL_6GZQ_126

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CG*CUG

Length

5 nucleotides

Bulged bases

6GZQ|1|A2|U|1177

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZQ_126 not in the Motif Atlas

Homologous match to IL_6CZR_156

Geometric discrepancy: 0.19

The information below is about IL_6CZR_156

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

6GZQ|1|A2|C|1042
6GZQ|1|A2|G|1043
*
6GZQ|1|A2|C|1176
6GZQ|1|A2|U|1177
6GZQ|1|A2|G|1178

Current chains

Chain A2

16S ribosomal RNA

Nearby chains

Chain C2

30S ribosomal protein S3

Chain E2

30S ribosomal protein S5

Chain J2

30S ribosomal protein S10

Chain N2

30S ribosomal protein S14 type Z

Chain V2

Ribosome hibernation promoting factor