IL_6GZQ_135

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CAUGG*CUGGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZQ_135 not in the Motif Atlas

Geometric match to IL_5TBW_121

Geometric discrepancy: 0.3678

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

6GZQ|1|A2|C|1394
6GZQ|1|A2|A|1395
6GZQ|1|A2|U|1396
6GZQ|1|A2|G|1397
6GZQ|1|A2|G|1398
*
6GZQ|1|A2|C|1461
6GZQ|1|A2|U|1462
6GZQ|1|A2|G|1463
6GZQ|1|A2|G|1464
6GZQ|1|A2|G|1465

Current chains

Chain A2

16S ribosomal RNA

Nearby chains

Chain A1

Large subunit ribosomal RNA; LSU rRNA

Chain L2

30S ribosomal protein S12