IL_6GZQ_145

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GCA*UGAC

Length

7 nucleotides

Bulged bases

6GZQ|1|A1|A|471

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZQ_145 not in the Motif Atlas

Geometric match to IL_5UNE_009

Geometric discrepancy: 0.1917

The information below is about IL_5UNE_009

Detailed Annotation

Isolated non-canonical cWW contact

Broad Annotation

No text annotation

Motif group

IL_44465.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

9

Unit IDs

6GZQ|1|A1|G|36
6GZQ|1|A1|C|37
6GZQ|1|A1|A|38
*
6GZQ|1|A1|U|469
6GZQ|1|A1|G|470
6GZQ|1|A1|A|471
6GZQ|1|A1|C|472

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain E1

50S ribosomal protein L4

Chain P1

50S ribosomal protein L20