IL_6GZQ_161

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GGCG*CGACC

Length

9 nucleotides

Bulged bases

6GZQ|1|A1|A|2005

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZQ_161 not in the Motif Atlas

Geometric match to IL_4K27_001

Geometric discrepancy: 0.258

The information below is about IL_4K27_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

6GZQ|1|A1|G|1802
6GZQ|1|A1|G|1803
6GZQ|1|A1|C|1804
6GZQ|1|A1|G|1805
*
6GZQ|1|A1|C|2003
6GZQ|1|A1|G|2004
6GZQ|1|A1|A|2005
6GZQ|1|A1|C|2006
6GZQ|1|A1|C|2007

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain A2

Small subunit ribosomal RNA; SSU rRNA

Chain C1

50S ribosomal protein L2