IL_6GZQ_162

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CCUGG*CUUGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZQ_162 not in the Motif Atlas

Geometric match to IL_8S95_002

Geometric discrepancy: 0.3005

The information below is about IL_8S95_002

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_49751.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

6GZQ|1|A1|C|2108
6GZQ|1|A1|C|2109
6GZQ|1|A1|U|2110
6GZQ|1|A1|G|2111
6GZQ|1|A1|G|2112
*
6GZQ|1|A1|C|2245
6GZQ|1|A1|U|2246
6GZQ|1|A1|U|2247
6GZQ|1|A1|G|2248
6GZQ|1|A1|G|2249

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain C1

50S ribosomal protein L2

Chain W1

50S ribosomal protein L28