IL_6GZQ_171

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GGACG*CGGUAC

Length

11 nucleotides

Bulged bases

6GZQ|1|A2|G|469

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZQ_171 not in the Motif Atlas

Homologous match to IL_6CZR_130

Geometric discrepancy: 0.3066

The information below is about IL_6CZR_130

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.3

Basepair signature

cWW-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6GZQ|1|A2|G|440
6GZQ|1|A2|G|441
6GZQ|1|A2|A|442
6GZQ|1|A2|C|443
6GZQ|1|A2|G|444
*
6GZQ|1|A2|C|467
6GZQ|1|A2|G|468
6GZQ|1|A2|G|469
6GZQ|1|A2|U|470
6GZQ|1|A2|A|471
6GZQ|1|A2|C|472

Current chains

Chain A2

16S ribosomal RNA

Nearby chains

Chain D2

30S ribosomal protein S4

Chain P2

30S ribosomal protein S16