IL_6GZQ_190

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GGAAG*UGACAAC

Length

12 nucleotides

Bulged bases

6GZQ|1|A1|C|1592

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZQ_190 not in the Motif Atlas

Homologous match to IL_9DFE_062

Geometric discrepancy: 0.4212

The information below is about IL_9DFE_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_09044.1

Basepair signature

cWW-tSH-tHH-L-tHS-cWW

Number of instances in this motif group

1

Unit IDs

6GZQ|1|A1|G|1574
6GZQ|1|A1|G|1575
6GZQ|1|A1|A|1576
6GZQ|1|A1|A|1577
6GZQ|1|A1|G|1578
*
6GZQ|1|A1|U|1589
6GZQ|1|A1|G|1590
6GZQ|1|A1|A|1591
6GZQ|1|A1|C|1592
6GZQ|1|A1|A|1593
6GZQ|1|A1|A|1594
6GZQ|1|A1|C|1595

Current chains

Chain A1

23S ribosomal RNA

Nearby chains