IL_6GZQ_201

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CAAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZQ_201 not in the Motif Atlas

Homologous match to IL_4LFB_033

Geometric discrepancy: 0.1454

The information below is about IL_4LFB_033

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_05821.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

17

Unit IDs

6GZQ|1|A2|C|762
6GZQ|1|A2|A|763
6GZQ|1|A2|A|764
6GZQ|1|A2|A|765
6GZQ|1|A2|C|766
*
6GZQ|1|A2|G|782
6GZQ|1|A2|G|783
6GZQ|1|A2|U|784
6GZQ|1|A2|A|785
6GZQ|1|A2|G|786

Current chains

Chain A2

16S ribosomal RNA

Nearby chains

Chain A1

Large subunit ribosomal RNA; LSU rRNA

Chain K2

30S ribosomal protein S11