IL_6GZX_003

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

UAG*CGAAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZX_003 not in the Motif Atlas

Homologous match to IL_7RQB_013

Geometric discrepancy: 0.2669

The information below is about IL_7RQB_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_69440.1

Basepair signature

cWW-L-R-cSH-cWW

Number of instances in this motif group

3

Unit IDs

6GZX|1|A1|U|318
6GZX|1|A1|A|319
6GZX|1|A1|G|320
*
6GZX|1|A1|C|368
6GZX|1|A1|G|369
6GZX|1|A1|A|370
6GZX|1|A1|A|371
6GZX|1|A1|A|372

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain T1

50S ribosomal protein L24