IL_6GZX_016

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

GC*GUC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZX_016 not in the Motif Atlas

Geometric match to IL_5IBB_340

Geometric discrepancy: 0.2978

The information below is about IL_5IBB_340

Detailed Annotation

Single base bend

Broad Annotation

Single base bend

Motif group

IL_15011.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

54

Unit IDs

6GZX|1|A1|G|1001
6GZX|1|A1|C|1002
*
6GZX|1|A1|G|1009
6GZX|1|A1|U|1010
6GZX|1|A1|C|1011

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain B1

5S ribosomal RNA; 5S rRNA

Chain L1

50S ribosomal protein L16

Chain V1

50S ribosomal protein L27