IL_6GZX_035

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

GGAACUCUG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZX_035 not in the Motif Atlas

Homologous match to IL_4WF9_117

Geometric discrepancy: 0.2951

The information below is about IL_4WF9_117

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80252.1

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

10

Unit IDs

6GZX|1|A1|G|1715
6GZX|1|A1|G|1716
6GZX|1|A1|A|1717
6GZX|1|A1|A|1718
6GZX|1|A1|C|1719
6GZX|1|A1|U|1720
6GZX|1|A1|C|1721
6GZX|1|A1|U|1722
6GZX|1|A1|G|1723
*
6GZX|1|A1|C|2014
6GZX|1|A1|U|2015
6GZX|1|A1|G|2016
6GZX|1|A1|U|2017
6GZX|1|A1|C|2018

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain D1

50S ribosomal protein L3

Chain J1

50S ribosomal protein L14