IL_6GZX_049

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

UGA*UG

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZX_049 not in the Motif Atlas

Geometric match to IL_1S03_004

Geometric discrepancy: 0.2595

The information below is about IL_1S03_004

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.8

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

43

Unit IDs

6GZX|1|A1|U|2471
6GZX|1|A1|G|2472
6GZX|1|A1|A|2473
*
6GZX|1|A1|U|2507
6GZX|1|A1|G|2508

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain L1

50S ribosomal protein L16