IL_6GZX_050

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

AUC*GGUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZX_050 not in the Motif Atlas

Homologous match to IL_5J7L_337

Geometric discrepancy: 0.4543

The information below is about IL_5J7L_337

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

6GZX|1|A1|A|2473
6GZX|1|A1|U|2474
6GZX|1|A1|C|2475
*
6GZX|1|A1|G|2503
6GZX|1|A1|G|2504
6GZX|1|A1|U|2505
6GZX|1|A1|U|2506
6GZX|1|A1|U|2507

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain L1

50S ribosomal protein L16