IL_6GZX_061

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

GGCA*UGACC

Length

9 nucleotides

Bulged bases

6GZX|1|A2|A|471

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZX_061 not in the Motif Atlas

Geometric match to IL_4V88_429

Geometric discrepancy: 0.3794

The information below is about IL_4V88_429

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

6GZX|1|A2|G|35
6GZX|1|A2|G|36
6GZX|1|A2|C|37
6GZX|1|A2|A|38
*
6GZX|1|A2|U|469
6GZX|1|A2|G|470
6GZX|1|A2|A|471
6GZX|1|A2|C|472
6GZX|1|A2|C|473

Current chains

Chain A2

23S ribosomal RNA

Nearby chains

Chain E2

50S ribosomal protein L4

Chain P2

50S ribosomal protein L20