IL_6GZX_080

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

CCC*GGGCUUAAGCCCAGCG

Length

19 nucleotides

Bulged bases

6GZX|1|A2|U|1188, 6GZX|1|A2|U|1189

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZX|1|A2|C|1052
6GZX|1|A2|C|1053
6GZX|1|A2|C|1054
*
6GZX|1|A2|G|1184
6GZX|1|A2|G|1185
6GZX|1|A2|G|1186
6GZX|1|A2|C|1187
6GZX|1|A2|U|1188
6GZX|1|A2|U|1189
6GZX|1|A2|A|1190
6GZX|1|A2|A|1191
6GZX|1|A2|G|1192
6GZX|1|A2|C|1193
6GZX|1|A2|C|1194
6GZX|1|A2|C|1195
6GZX|1|A2|A|1196
6GZX|1|A2|G|1197
6GZX|1|A2|C|1198
6GZX|1|A2|G|1199

Current chains

Chain A2

23S ribosomal RNA

Nearby chains

Chain B2

5S ribosomal RNA; 5S rRNA

Chain G2

50S ribosomal protein L6

Chain I2

50S ribosomal protein L13

Chain P2

50S ribosomal protein L20