IL_6GZX_114

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

CAGCC*GGCGGG

Length

11 nucleotides

Bulged bases

6GZX|1|A2|G|2252

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZX_114 not in the Motif Atlas

Geometric match to IL_5VOE_003

Geometric discrepancy: 0.3661

The information below is about IL_5VOE_003

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_21086.2

Basepair signature

cWW-L-R-L-R-L-R-cWW

Number of instances in this motif group

2

Unit IDs

6GZX|1|A2|C|2105
6GZX|1|A2|A|2106
6GZX|1|A2|G|2107
6GZX|1|A2|C|2108
6GZX|1|A2|C|2109
*
6GZX|1|A2|G|2248
6GZX|1|A2|G|2249
6GZX|1|A2|C|2250
6GZX|1|A2|G|2251
6GZX|1|A2|G|2252
6GZX|1|A2|G|2253

Current chains

Chain A2

23S ribosomal RNA

Nearby chains

Chain C2

50S ribosomal protein L2

Chain W2

50S ribosomal protein L28