IL_6GZX_117

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZX_117 not in the Motif Atlas

Homologous match to IL_5J7L_333

Geometric discrepancy: 0.3612

The information below is about IL_5J7L_333

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

6GZX|1|A2|C|2364
6GZX|1|A2|G|2365
6GZX|1|A2|A|2366
6GZX|1|A2|G|2367
*
6GZX|1|A2|C|2378
6GZX|1|A2|G|2379
6GZX|1|A2|A|2380
6GZX|1|A2|G|2381

Current chains

Chain A2

23S ribosomal RNA

Nearby chains

Chain V2

50S ribosomal protein L27

Chain d2

50S ribosomal protein L35