IL_6GZX_118

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

AGG*CACCU

Length

8 nucleotides

Bulged bases

6GZX|1|A2|C|2513

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZX_118 not in the Motif Atlas

Homologous match to IL_5J7L_335

Geometric discrepancy: 0.3596

The information below is about IL_5J7L_335

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZX|1|A2|A|2467
6GZX|1|A2|G|2468
6GZX|1|A2|G|2469
*
6GZX|1|A2|C|2510
6GZX|1|A2|A|2511
6GZX|1|A2|C|2512
6GZX|1|A2|C|2513
6GZX|1|A2|U|2514

Current chains

Chain A2

23S ribosomal RNA

Nearby chains

Chain D2

50S ribosomal protein L3

Chain L2

50S ribosomal protein L16