IL_6GZX_120

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

AUC*GGUUU

Length

8 nucleotides

Bulged bases

6GZX|1|A2|U|2505

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZX_120 not in the Motif Atlas

Geometric match to IL_3OXE_002

Geometric discrepancy: 0.3745

The information below is about IL_3OXE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_13785.1

Basepair signature

cWW-L-tHS-cWW

Number of instances in this motif group

1

Unit IDs

6GZX|1|A2|A|2473
6GZX|1|A2|U|2474
6GZX|1|A2|C|2475
*
6GZX|1|A2|G|2503
6GZX|1|A2|G|2504
6GZX|1|A2|U|2505
6GZX|1|A2|U|2506
6GZX|1|A2|U|2507

Current chains

Chain A2

23S ribosomal RNA

Nearby chains

Chain L2

50S ribosomal protein L16