IL_6GZX_152

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

UGG*CA

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZX_152 not in the Motif Atlas

Geometric match to IL_7KGA_003

Geometric discrepancy: 0.363

The information below is about IL_7KGA_003

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

54

Unit IDs

6GZX|1|A3|U|929
6GZX|1|A3|G|930
6GZX|1|A3|G|931
*
6GZX|1|A3|C|1209
6GZX|1|A3|A|1210

Current chains

Chain A3

16S ribosomal RNA

Nearby chains

Chain I3

30S ribosomal protein S9

Chain M3

30S ribosomal protein S13

Chain N3

30S ribosomal protein S14 type Z

Chain S3

30S ribosomal protein S19

Chain V3

Ribosome hibernation promoting factor