IL_6GZX_158

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

GCCAC*GGAGC

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZX_158 not in the Motif Atlas

Homologous match to IL_5J7L_056

Geometric discrepancy: 0.4661

The information below is about IL_5J7L_056

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6GZX|1|A3|G|1239
6GZX|1|A3|C|1240
6GZX|1|A3|C|1241
6GZX|1|A3|A|1242
6GZX|1|A3|C|1243
*
6GZX|1|A3|G|1254
6GZX|1|A3|G|1255
6GZX|1|A3|A|1256
6GZX|1|A3|G|1257
6GZX|1|A3|C|1258

Current chains

Chain A3

16S ribosomal RNA

Nearby chains

Chain J3

30S ribosomal protein S10

Chain U3

30S ribosomal protein Thx