IL_6GZX_164

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

CUC*GG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZX_164 not in the Motif Atlas

Geometric match to IL_5TBW_004

Geometric discrepancy: 0.3166

The information below is about IL_5TBW_004

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_05035.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

38

Unit IDs

6GZX|1|A3|C|1406
6GZX|1|A3|U|1407
6GZX|1|A3|C|1408
*
6GZX|1|A3|G|1452
6GZX|1|A3|G|1453

Current chains

Chain A3

16S ribosomal RNA

Nearby chains

Chain A1

Large subunit ribosomal RNA; LSU rRNA

Chain J1

50S ribosomal protein L14