IL_6GZX_169

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

GU*GAC

Length

5 nucleotides

Bulged bases

6GZX|1|A4|A|392

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZX_169 not in the Motif Atlas

Homologous match to IL_6CZR_114

Geometric discrepancy: 0.353

The information below is about IL_6CZR_114

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

130

Unit IDs

6GZX|1|A4|G|44
6GZX|1|A4|U|45
*
6GZX|1|A4|G|391
6GZX|1|A4|A|392
6GZX|1|A4|C|393

Current chains

Chain A4

16S ribosomal RNA

Nearby chains

Chain P4

30S ribosomal protein S16