3D structure

PDB id
6GZX (explore in PDB, NAKB, or RNA 3D Hub)
Description
T. thermophilus hibernating 100S ribosome (ice)
Experimental method
ELECTRON MICROSCOPY
Resolution
4.57 Å

Loop

Sequence
UGUAGAGCACUG*CAAACUCCGAAG
Length
24 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6GZX|1|A1|U|907
6GZX|1|A1|G|908
6GZX|1|A1|U|909
6GZX|1|A1|A|910
6GZX|1|A1|G|911
6GZX|1|A1|A|912
6GZX|1|A1|G|913
6GZX|1|A1|C|914
6GZX|1|A1|A|915
6GZX|1|A1|C|916
6GZX|1|A1|U|917
6GZX|1|A1|G|918
*
6GZX|1|A1|C|956
6GZX|1|A1|A|957
6GZX|1|A1|A|958
6GZX|1|A1|A|959
6GZX|1|A1|C|960
6GZX|1|A1|U|961
6GZX|1|A1|C|962
6GZX|1|A1|C|963
6GZX|1|A1|G|964
6GZX|1|A1|A|965
6GZX|1|A1|A|966
6GZX|1|A1|G|967

Current chains

Chain A1
23S ribosomal RNA

Nearby chains

Chain B1
5S ribosomal RNA; 5S rRNA
Chain L1
50S ribosomal protein L16
Chain U1
50S ribosomal protein L25
Chain V1
50S ribosomal protein L27
Chain Y1
50S ribosomal protein L30

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