IL_6GZX_209

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

CAAG*CGCAAACCGACACAGGUG

Length

22 nucleotides

Bulged bases

6GZX|1|A1|C|1655, 6GZX|1|A1|A|1658, 6GZX|1|A1|A|1662, 6GZX|1|A1|A|1666

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZX|1|A1|C|1354
6GZX|1|A1|A|1355
6GZX|1|A1|A|1356
6GZX|1|A1|G|1357
*
6GZX|1|A1|C|1653
6GZX|1|A1|G|1654
6GZX|1|A1|C|1655
6GZX|1|A1|A|1656
6GZX|1|A1|A|1657
6GZX|1|A1|A|1658
6GZX|1|A1|C|1659
6GZX|1|A1|C|1660
6GZX|1|A1|G|1661
6GZX|1|A1|A|1662
6GZX|1|A1|C|1663
6GZX|1|A1|A|1664
6GZX|1|A1|C|1665
6GZX|1|A1|A|1666
6GZX|1|A1|G|1667
6GZX|1|A1|G|1668
6GZX|1|A1|U|1669
6GZX|1|A1|G|1670

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain R1

50S ribosomal protein L22

Chain c1

50S ribosomal protein L34