IL_6GZX_219

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

UCGGACACCGAAUCCCCAGC*GUGGGGGGAUAGGUGA

Length

36 nucleotides

Bulged bases

6GZX|1|A2|G|299, 6GZX|1|A2|A|303, 6GZX|1|A2|C|304, 6GZX|1|A2|A|308, 6GZX|1|A2|C|312, 6GZX|1|A2|G|377, 6GZX|1|A2|G|378, 6GZX|1|A2|G|381, 6GZX|1|A2|G|386, 6GZX|1|A2|U|387

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZX|1|A2|U|297
6GZX|1|A2|C|298
6GZX|1|A2|G|299
6GZX|1|A2|G|300
6GZX|1|A2|A|301
6GZX|1|A2|C|302
6GZX|1|A2|A|303
6GZX|1|A2|C|304
6GZX|1|A2|C|305
6GZX|1|A2|G|306
6GZX|1|A2|A|307
6GZX|1|A2|A|308
6GZX|1|A2|U|309
6GZX|1|A2|C|310
6GZX|1|A2|C|311
6GZX|1|A2|C|312
6GZX|1|A2|C|313
6GZX|1|A2|A|314
6GZX|1|A2|G|315
6GZX|1|A2|C|316
*
6GZX|1|A2|G|374
6GZX|1|A2|U|375
6GZX|1|A2|G|376
6GZX|1|A2|G|377
6GZX|1|A2|G|378
6GZX|1|A2|G|379
6GZX|1|A2|G|380
6GZX|1|A2|G|381
6GZX|1|A2|A|382
6GZX|1|A2|U|383
6GZX|1|A2|A|384
6GZX|1|A2|G|385
6GZX|1|A2|G|386
6GZX|1|A2|U|387
6GZX|1|A2|G|388
6GZX|1|A2|A|389

Current chains

Chain A2

23S ribosomal RNA

Nearby chains