IL_6GZX_224

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

6GZX|1|A2|U|1060

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZX_224 not in the Motif Atlas

Homologous match to IL_4WF9_038

Geometric discrepancy: 0.3742

The information below is about IL_4WF9_038

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

6GZX|1|A2|G|1059
6GZX|1|A2|U|1060
6GZX|1|A2|C|1061
*
6GZX|1|A2|G|1197
6GZX|1|A2|C|1198

Current chains

Chain A2

23S ribosomal RNA

Nearby chains

Chain I2

50S ribosomal protein L13

Chain P2

50S ribosomal protein L20